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Multiplex analysis of polyA-linked sequences (MAPS): An RNA-Seq strategy to profile poly(A+) RNA

  • Yu Zhou
  • , Hai Ri Li
  • , Jie Huang
  • , Ge Jin
  • , Xiang Dong Fu

科研成果: 书/报告/会议事项章节章节同行评审

8 引用 (Scopus)

摘要

We summarize 12 experimental methods that have been developed for profiling gene expression by focusing on the 3′-end of poly(A+) mRNA, distilling both common and unique features. Of this family of methods, we provide detailed protocol for MAPS, a method we believe is the simplest and most cost-effective for profiling gene expression and quantifying alternative polyadenylation events by oligo-dT priming followed by random priming and deep sequencing. This method also enables library multiplexing by using a set of bar coding primers during PCR amplification. We also provide a general guideline for analysis of the data generated by MAPS by using the software package maps3end.

源语言英语
主期刊名Methods in Molecular Biology
出版商Humana Press Inc.
169-178
页数10
DOI
出版状态已出版 - 2014

出版系列

姓名Methods in Molecular Biology
1125
ISSN(印刷版)1064-3745

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