NMPP: A user-customized NimbleGen microarray data processing pipeline

Xiangfeng Wang; Hang He; Lei Li; Runsheng Chen; Xing Wang Deng; Songgang Li

doi:10.1093/bioinformatics/btl525

NMPP: A user-customized NimbleGen microarray data processing pipeline

Xiangfeng Wang
, Hang He
, Lei Li
, Runsheng Chen
, Xing Wang Deng
, Songgang Li

Peking University
Yale University
Institute of Biophysics Chinese Academy of Sciences

科研成果: 期刊稿件 › 文章 › 同行评审

26 引用（Scopus）

摘要

Summary: NMPP package is a bundle of user-customized tools based on established algorithms and methods to process self-designed NimbleGen microarray data. It features a command-line-based integrative processing procedure that comprises five major functional components, namely the raw microarray data parsing and integrating module, the array spatial effect smoothing and visualization module, the probe-level multi-array normalization module, the gene expression intensity summarization module and the gene expression status inference module.

源语言	英语
页（从-至）	2955-2957
页数	3
期刊	Bioinformatics
卷	22
期	23
DOI	https://doi.org/10.1093/bioinformatics/btl525
出版状态	已出版 - 1 12月 2006
已对外发布	是

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NMPP: A user-customized NimbleGen microarray data processing pipeline

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